{ "_id": "6a1ed465b401979e7340e19b", "Package": "BRCore", "Title": "A Unified Framework for Identification and Ecological\nInterpretation of Microbial Data from Bioenergy Research\nCenters", "Version": "2.0.7.9000", "Authors@R": "c(\nperson(\"Bolívar\", \"Aponte Rolón\",\nemail = \"bolaponte@pm.me\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-2544-4551\")),\nperson(\"Gian Maria Niccolò\", \"Benucci\",\nemail = \"benucci@msu.edu\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0003-1589-947X\", \"Co-maintainer\")),\nperson(\"Brandon\", \"Kristy\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0003-2421-7143\")),\nperson(\"Ashley\", \"Shade\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-7189-3067\")),\nperson(\"Nejc\", \"Stopnisek\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-1532-6826\")),\nperson(\"Adina\", \"Howe\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-7705-343X\")),\nperson(\"Center for Advanced Bioenergy and Bioproducts Innovation\",\nrole = c(\"cph\", \"fnd\")),\nperson(\"Great Lakes Bioenergy Research Center\",\nrole = c(\"cph\", \"fnd\"))\n)", "Description": "A unified framework for identification and ecological\ninterpretation of core microbiomes across time and space,\nenhancing robustness and reproducibility in microbiome data\nanalysis. 'BRCore' implements the workflow proposed by Shade\nand Stopnisek (2019) and incorporates additional rarefaction\nsteps. The proposed workflow aims to identify persistent\nmicrobiomes using abundance-occupancy distributions and neutral\ncommunity model fitting. For more details on\nabundance-occupancy distributions see Shade A, Stopnisek N\n(2019) , for neutral models, see\nSloan et al. (2006) and\nBurns et al. (2015) .", "biocViews": "", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Language": "en-US", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "LazyData": "true", "VignetteBuilder": "knitr", "URL": "https://github.com/germs-lab/BRCore,\nhttps://www.germslab.org/BRCore/", "BugReports": "https://github.com/germs-lab/BRCore/issues", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev zlib1g-dev", "Repository": "https://germs-lab.r-universe.dev", "Date/Publication": "2026-05-20 17:37:12 UTC", "RemoteUrl": "https://github.com/germs-lab/brcore", "RemoteRef": "HEAD", "RemoteSha": "b08c3c183ce71153685ef9ec9bba254a8dca6cb1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-20 19:38:27 UTC", "User": "root" }, "Author": "Bolívar Aponte Rolón [aut, cre] (ORCID:\n),\nGian Maria Niccolò Benucci [aut] (ORCID:\n, Co-maintainer),\nBrandon Kristy [aut] (ORCID: ),\nAshley Shade [aut] (ORCID: ),\nNejc Stopnisek [aut] 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